PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00314.1_g00017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 304aa    MW: 35043.4 Da    PI: 9.306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00314.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.11.5e-48221502128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                               pGfrFhPtdeelv +yL kkv  kk  +++e+i+++diyk++PwdLp +++ +eke yfF+kr +ky+++ r+nr+t sg+Wkat
  Rsa1.0_00314.1_g00017.1  22 LPGFRFHPTDEELVGFYLSKKVLLKKpSKIDEIISHIDIYKFDPWDLP-RLRDTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKAT 106
                              59*******************877764888889***************.7778899****************************** PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+v+s   +++++glkktLv+y g+a kg+ktdW+mhe+rl
  Rsa1.0_00314.1_g00017.1 107 GIDKPVYSDgsSKAVIGLKKTLVYYIGSAGKGSKTDWMMHEFRL 150
                              ********9666677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.5121185IPR003441NAC domain
SuperFamilySSF1019414.05E-5022185IPR003441NAC domain
PfamPF023651.6E-2423150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMGSRDKRRA EQEEKEEQKL KLPGFRFHPT DEELVGFYLS KKVLLKKPSK IDEIISHIDI  60
YKFDPWDLPR LRDTEKESYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PVYSDGSSKA  120
VIGLKKTLVY YIGSAGKGSK TDWMMHEFRL PTANDTIPGD STHVNPTPPS LLHAEVWTLC  180
RIFKRNVSSR KYTPDWREVA SGKRVKPQQS KYQEAYISFG DNESTISTNN INVTESNGNY  240
ERNLFQLHQT PHQHQPILMD TASTTQVDNT GPHFSNDDIH NITYENWDEL RSVVEFAFGP  300
SSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-43121917171NO APICAL MERISTEM PROTEIN
1ut4_B8e-43121917171NO APICAL MERISTEM PROTEIN
1ut7_A8e-43121917171NO APICAL MERISTEM PROTEIN
1ut7_B8e-43121917171NO APICAL MERISTEM PROTEIN
3swm_A9e-431219110174NAC domain-containing protein 19
3swm_B9e-431219110174NAC domain-containing protein 19
3swm_C9e-431219110174NAC domain-containing protein 19
3swm_D9e-431219110174NAC domain-containing protein 19
3swp_A9e-431219110174NAC domain-containing protein 19
3swp_B9e-431219110174NAC domain-containing protein 19
3swp_C9e-431219110174NAC domain-containing protein 19
3swp_D9e-431219110174NAC domain-containing protein 19
3ulx_A9e-4321851168Stress-induced transcription factor NAC1
4dul_A8e-43121917171NAC domain-containing protein 19
4dul_B8e-43121917171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135261.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-72NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A078D2W90.0A0A078D2W9_BRANA; BnaA03g32520D protein
STRINGBra039353.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-165NAC family protein